CLC RNA Workbench

State of the art algorithms for free energy minimization based prediction of RNA secondary structure, including advanced options.
Advanced and fully integrated graphical editors for linear and 2D viewing and editing of RNA secondary structures and sequences.
Search and discovery of RNA patterns.
RNA, DNA and protein sequence editor displaying both linear and circular molecules.
RNA, DNA, and protein alignment editor.
Interactive logos along both RNA, DNA and Protein alignments.
A range of RNA analyses, including motif finding and state-of-the-art graphical viewing and editing options.
Detailed history log enabling tracking and documentation of all analyses and all modifying actions performed on a given piece of data (e.g. on a RNA sequence or on an alignment).
Local complexity region analyses.
Local and web-based BLAST integrated with advanced viewing of search results.
Manual annotation of sequences, including advanced editing and copying options.
Reverse translation from protein to gene, based on translation tables from a number of species.
Advanced restriction enzyme analysis and management.
Dot plot based analyses.
Simulation of restriction maps.
NCBI sequence data search.
Access to web info from Google and Pubmed.

Option of importing and working with external files such as PDF files, word processing files, and spreadsheet files directly from the program’s data repository. All types of files related to a research project can thus be managed from a single application on your computer.
Full integration of data management, bioinformatics analyses, reporting, and documentation of results. This eliminates the time spent on manual data transfers between different programs and databases.
A number of output functionalities, including printing and generation of graphics output in various file formats.
Full integration with CLC Bioinformatics Cube. The Cube provides hardware accelerated database searches of high precision and high speed - up to 200 times faster than a laptop computer.
A number of output functionalities, including printing and generation of graphics output in various file formats.
All features of CLC Free Workbench.
Option of developing your own bioinformatics solutions using CLC Developer Kit.